Materials

Here is a preliminary plan of lectures for this year (the topics and their order may change).

2025-02-20
- ALL (TV) Introduction to the course Survey · Contact · Introduction · Rules · Connecting to server · Editors · Command-line basics
- ALL (TV) Introduction to Perl Lecture · Homework
2025-02-27
- ALL (BB) Command-line tools, Perl one-liners Lecture · Homework
2025-03-06
- ALL (TV) Job scheduling and make Lecture · Homework
2025-03-13
- ALL Introduction to projects Project
- ALL (TV) SQL (and Python) for beginners Lecture · Homework · Python tutorial
2025-03-20
- INF/DAV (VB) Python, web crawling, HTML parsing, sqlite3 Lecture · Homework · Screen
- BIN (BB) Bioinformatics 1 (sequencing and genome assembly) Lecture · Homework
2025-03-27
2025-04-03
- INF/DAV (VB) Text data processing, flask Lecture · Homework
- BIN (BB) Bioinformatics 2 (gene finding, RNA-seq) Lecture · Homework
2025-04-10
- INF/DAV (VB) Data visualization in JavaScript Lecture · Homework
- BIN (BB) Bioinformatics 3 (genome variants) Lecture · Homework
- ALL Project proposals due Monday April 14
2025-04-17 Easter
2025-04-24
- ALL (BB) Python + C++ Lecture · Homework
2025-05-01 Holiday
2025-05-08 Holiday
2025-05-15
- ALL (VB) Parallel computing Lecture · Homework
2025-05-22 No lecture
Optional introduction to R If you are interested in R language, you can look at these lectures and homeworks. Files for the tasks are available on the server. However do not submit these homeworks.
- ALL Tutorial to R and basic plotting Lecture · Homework
- ALL Statistical tests in R Lecture · Homework